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|logo_BGE_alpha|

Bioscan biomonitoring workflow
******************************

This is the documentation for the metabarcoding workflows (*bioscanflow*) developed and used withing the framework of `Biodiversity Genomics Europe <https://biodiversitygenomics.eu/>`_ (BGE). 
The documentation includes the following sections:

.. grid:: 3

    .. grid-item-card::
        :text-align: center
        :link: 1sampling.html

        |nature_people|

        **Sampling**

    .. grid-item-card::
        :text-align: center
        :link: 2sample_prep.html

        |experiment|

        **Sample prep.**

    .. grid-item-card::
        :text-align: center
        :link: 3DNA_extraction.html

        |genetics|

        **DNA extraction**

.. grid:: 3

    .. grid-item-card::
        :text-align: center
        :link: 4amplicon_lib.html

        |labs|

        **Library prep.**

    .. grid-item-card::
        :text-align: center
        :link: 6bioinfo.html

        |terminal|
          
        **Bioinformatics**

    .. grid-item-card::
        :text-align: center
        :link: 7interpret.html

        |search_insights|
          
        **Examine metabarcoding outputs**

    

Contents
========

.. toctree::
   :maxdepth: 2

   0what_is_metabarcoding
   1_case_studies
   1sampling
   2sample_prep
   3DNA_extraction
   4amplicon_lib
   6bioinfo
   7examine_outputs
   8data_sharing
   9additional_resources

____________________________________________________

|logo_BGE_small| |eufund| |chfund| |ukrifund|